other:Article Title:
Article Snippet: Goat anti-OPN , R and D Systems , Cat# AF808.
Article Title: Table 2.
Article Snippet: SPP1 , RD Systems , AF808 , 1:50 , IF.
Article Title:
Article Snippet: Goat anti-mouse Spp1 polyclonal , R&D Systems , Cat# AF808; RRID: AB_2194992.
Virus:Article Title: Axon guidance during mouse central nervous system regeneration is required for specific brain innervation.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken polyclonal anti-GFP antibody Abcam Cat# ab13970; RRID: AB_300798 Goat polyclonal anti-VGLUT2 antibody Abcam Cat# ab178538; RRID: AB_3661773 Goat anti-CART antibody R&D Systems Cat# AF163; RRID: AB_2068569 Goat anti-parvalbumin antibody Abcam Cat# ab32895; RRID: AB_777105 Goat anti-osteopontin R&D Systems Cat# AF808; RRID: AB_2194992 Guinea polyclonal pig anti-RBPMS antibody Millipore Cat# ABN1376; RRID: AB_2687403 Mouse monoclonal anti-tubulin b3 (TUJ1) antibody Biolegend Cat# 801202;RRID: AB_10063408 Mouse monoclonal anti-PSD95 antibody Abcam Cat# ab2723 ; RRID: AB_303248 Mouse anti-Neurofilament H (NF-H), nonphosphorylated antibody (clone SMI-32) Biolegend Cat# 801701; RRID: AB_2564642 Rabbit polyclonal anti-VIP (Vasoactive Intestinal Peptide) antibody Immunostar Cat# 20077;RRID: AB_572270 Rabbit monoclonal anti-c-fos antibody Cell Signaling Technology Cat# 2250 ; RRID: AB_2247211 Rabbit anti-FOXP2 Abcam Cat# ab16046; RRID: AB_2107107 Rabbit polyclonal anti-melanopsin antibody Abcam Cat# ab19306; RRID: AB_444842 Rabbit polyclonal anti-Cre recombinase antibody Biolegend Cat# 908001; RRID: AB_2565079 Goat polyclonal anti-Robo1 antibody R&D Systems Cat# AF1749; RRID: AB_354969 Goat polyclonal anti-Robo2 antibody Dr Alain Chédotal (Institut de la Vision, Paris, France; MeLiS, University Claude Bernard Lyon 1, Hospices civils de Lyon, Lyon, France); Dominici et al.63 N/A Donkey anti-rabbit IgG (H+L) highly crossabsorbed secondary antibody, Alexa Fluor 488 Thermo Fisher Scientific Cat# A-21206;RRID: AB_2535792 Donkey anti-rabbit IgG (H+L) highly crossabsorbed secondary antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-31573;RRID: AB_2536183 Donkey anti-chicken IgY (IgG) (H+L) antibody, Alexa Fluor 488 Jackson ImmunoResearch Labs Cat# 703-545-155; RRID: AB_2340375 Donkey anti-guinea pig IgG (H+L), Alexa Fluor 647 Jackson ImmunoResearch Labs Cat# 706-605-148; RRID: AB_2340476 Donkey anti-goat IgG (H+L), Alexa Fluor 488 Thermo Fisher Scientific Cat# A11055; RRID: AB_2534102 Donkey anti-mouse IgG (H+L), Alexa Fluor 647 Thermo Fisher Scientific Cat# A31571; RRID_162542 Donkey anti-mouse IgG (H+L), Alexa Fluor 568 Thermo Fisher Scientific Cat# A10037; RRID: AB_2534013 Bacterial and virus strains AAV2-Cre Belin et al.4 N/A AAV2-CNTF Belin et al.4 N/A AAV2-c-myc Belin et al.4 N/A AAV2-TVA-RG Produced using pAAV-DIO-TVA-V5-RG (see Recombinant DNA) N/A AAV2-pVIP-Cre This paper N/A (Continued on next page) Developmental Cell 59, 1–16.e1–e8, December 16, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Primer ISH: Robo1 Forward; 5’-AGCAGTGGATGGCACTTTAA-3’ This paper N/A Primer ISH: Robo1 Reverse; 5’-GGAAAAGGTAAATGGCGTTA-3’ This paper N/A Primer ISH: Robo2 Forward; 5’-CTTTTCCCGAATCAACCTCA-3’ This paper N/A Primer ISH: Robo2 Reverse; 5’-GGGAGGTCATTCATATCATA-3’ This paper N/A Primer ISH: Sema6D Forward; 5’-TTCCTCCATGTGTGTCCTGT-3’ This paper N/A Primer ISH: Sema6D Reverse; 5’-GTTGGGTAAATGACTGGGTGATGT-3’ This paper N/A Primer ISH: Sfrp1 Forward; 5’-GGACCTGAGGCTGTGCCACA-3’ This paper N/A Primer ISH: Sfrp1 Reverse; 5’-TCTTCTTGGGGACAATCTTC-3’ This paper N/A Primer ISH: Sfrp2 Forward; 5’-GCCCAACCTGCTGGGCCACG-3’ This paper N/A Primer ISH: Sfrp2 Reverse; 5’-CGCCGTTCAGCTTGTAAATG-3’ This paper N/A Primer ISH: Slit1 Forward; 5’-CACTGGGTTGTTTAAGAAGC-3’ This paper N/A Primer ISH: Slit1 Reverse; 5’-CCTGGCCTTCCTCACACCTG-3’ This paper N/A Primer ISH: Slit2 Forward; 5’-CCTGCCAGCATGACTCCAAG-3’ This paper N/A Primer ISH: Slit2 Reverse; 5’-TCTATAGAGTTCCACGGCAA-3’ This paper N/A Primer ISH: VEGF-A Forward; 5’-GCAGCGACAAGGCAGACTA-3’ This paper N/A Primer ISH: VEGF-A Reverse; 5’-GCTAGCACTTCTCCCAGCTC-3’ This paper N/A Primer qPCR: Slit1 Forward; 5’-AGGTGCAAAAGGGCGAAT-3’ This paper N/A Primer qPCR: Slit1 Reverse; 5’-CGAGAGGGTACAGGCAGGT-3’ This paper N/A Primer qPCR: Slit2 Forward; 5’-CGGGGACAGCTGTGATAGAG-3’ This paper N/A Primer qPCR: Slit2 Reverse; 5’-CCAAGCGAGATACTTTCTTAGTTGT-3’ This paper N/A Primer qPCR: Slit3 Forward; 5’-gccacctcagtgagaacctc-3’ This paper N/A Primer qPCR: Slit3 Reverse; 5’-tgtccctcaaagcccaga-3’ This paper N/A Primer qPCR: Gapdh Forward; 5’-GCATGGCCTTCCGTGTTC-3’, This paper N/A Primer qPCR: Gapdh Reverse; 5’-TGTCATCATACTTGGCAGGTTTCT-3’ This paper N/A Recombinant DNA Plasmid ISH: Ephrin-B1 Dr Valérie Castellani (MeLiS, University Claude Bernard Lyon 1, Lyon, France) N/A Plasmid ISH: Netrin1 Dr Valérie Castellani (MeLiS, University Claude Bernard Lyon 1, Lyon, France); Nawabi et al.66 N/A (Continued on next page) Developmental Cell 59, 1–16.e1–e8, December 16, 2024 e3
Produced:Article Title: Axon guidance during mouse central nervous system regeneration is required for specific brain innervation.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken polyclonal anti-GFP antibody Abcam Cat# ab13970; RRID: AB_300798 Goat polyclonal anti-VGLUT2 antibody Abcam Cat# ab178538; RRID: AB_3661773 Goat anti-CART antibody R&D Systems Cat# AF163; RRID: AB_2068569 Goat anti-parvalbumin antibody Abcam Cat# ab32895; RRID: AB_777105 Goat anti-osteopontin R&D Systems Cat# AF808; RRID: AB_2194992 Guinea polyclonal pig anti-RBPMS antibody Millipore Cat# ABN1376; RRID: AB_2687403 Mouse monoclonal anti-tubulin b3 (TUJ1) antibody Biolegend Cat# 801202;RRID: AB_10063408 Mouse monoclonal anti-PSD95 antibody Abcam Cat# ab2723 ; RRID: AB_303248 Mouse anti-Neurofilament H (NF-H), nonphosphorylated antibody (clone SMI-32) Biolegend Cat# 801701; RRID: AB_2564642 Rabbit polyclonal anti-VIP (Vasoactive Intestinal Peptide) antibody Immunostar Cat# 20077;RRID: AB_572270 Rabbit monoclonal anti-c-fos antibody Cell Signaling Technology Cat# 2250 ; RRID: AB_2247211 Rabbit anti-FOXP2 Abcam Cat# ab16046; RRID: AB_2107107 Rabbit polyclonal anti-melanopsin antibody Abcam Cat# ab19306; RRID: AB_444842 Rabbit polyclonal anti-Cre recombinase antibody Biolegend Cat# 908001; RRID: AB_2565079 Goat polyclonal anti-Robo1 antibody R&D Systems Cat# AF1749; RRID: AB_354969 Goat polyclonal anti-Robo2 antibody Dr Alain Chédotal (Institut de la Vision, Paris, France; MeLiS, University Claude Bernard Lyon 1, Hospices civils de Lyon, Lyon, France); Dominici et al.63 N/A Donkey anti-rabbit IgG (H+L) highly crossabsorbed secondary antibody, Alexa Fluor 488 Thermo Fisher Scientific Cat# A-21206;RRID: AB_2535792 Donkey anti-rabbit IgG (H+L) highly crossabsorbed secondary antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-31573;RRID: AB_2536183 Donkey anti-chicken IgY (IgG) (H+L) antibody, Alexa Fluor 488 Jackson ImmunoResearch Labs Cat# 703-545-155; RRID: AB_2340375 Donkey anti-guinea pig IgG (H+L), Alexa Fluor 647 Jackson ImmunoResearch Labs Cat# 706-605-148; RRID: AB_2340476 Donkey anti-goat IgG (H+L), Alexa Fluor 488 Thermo Fisher Scientific Cat# A11055; RRID: AB_2534102 Donkey anti-mouse IgG (H+L), Alexa Fluor 647 Thermo Fisher Scientific Cat# A31571; RRID_162542 Donkey anti-mouse IgG (H+L), Alexa Fluor 568 Thermo Fisher Scientific Cat# A10037; RRID: AB_2534013 Bacterial and virus strains AAV2-Cre Belin et al.4 N/A AAV2-CNTF Belin et al.4 N/A AAV2-c-myc Belin et al.4 N/A AAV2-TVA-RG Produced using pAAV-DIO-TVA-V5-RG (see Recombinant DNA) N/A AAV2-pVIP-Cre This paper N/A (Continued on next page) Developmental Cell 59, 1–16.e1–e8, December 16, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Primer ISH: Robo1 Forward; 5’-AGCAGTGGATGGCACTTTAA-3’ This paper N/A Primer ISH: Robo1 Reverse; 5’-GGAAAAGGTAAATGGCGTTA-3’ This paper N/A Primer ISH: Robo2 Forward; 5’-CTTTTCCCGAATCAACCTCA-3’ This paper N/A Primer ISH: Robo2 Reverse; 5’-GGGAGGTCATTCATATCATA-3’ This paper N/A Primer ISH: Sema6D Forward; 5’-TTCCTCCATGTGTGTCCTGT-3’ This paper N/A Primer ISH: Sema6D Reverse; 5’-GTTGGGTAAATGACTGGGTGATGT-3’ This paper N/A Primer ISH: Sfrp1 Forward; 5’-GGACCTGAGGCTGTGCCACA-3’ This paper N/A Primer ISH: Sfrp1 Reverse; 5’-TCTTCTTGGGGACAATCTTC-3’ This paper N/A Primer ISH: Sfrp2 Forward; 5’-GCCCAACCTGCTGGGCCACG-3’ This paper N/A Primer ISH: Sfrp2 Reverse; 5’-CGCCGTTCAGCTTGTAAATG-3’ This paper N/A Primer ISH: Slit1 Forward; 5’-CACTGGGTTGTTTAAGAAGC-3’ This paper N/A Primer ISH: Slit1 Reverse; 5’-CCTGGCCTTCCTCACACCTG-3’ This paper N/A Primer ISH: Slit2 Forward; 5’-CCTGCCAGCATGACTCCAAG-3’ This paper N/A Primer ISH: Slit2 Reverse; 5’-TCTATAGAGTTCCACGGCAA-3’ This paper N/A Primer ISH: VEGF-A Forward; 5’-GCAGCGACAAGGCAGACTA-3’ This paper N/A Primer ISH: VEGF-A Reverse; 5’-GCTAGCACTTCTCCCAGCTC-3’ This paper N/A Primer qPCR: Slit1 Forward; 5’-AGGTGCAAAAGGGCGAAT-3’ This paper N/A Primer qPCR: Slit1 Reverse; 5’-CGAGAGGGTACAGGCAGGT-3’ This paper N/A Primer qPCR: Slit2 Forward; 5’-CGGGGACAGCTGTGATAGAG-3’ This paper N/A Primer qPCR: Slit2 Reverse; 5’-CCAAGCGAGATACTTTCTTAGTTGT-3’ This paper N/A Primer qPCR: Slit3 Forward; 5’-gccacctcagtgagaacctc-3’ This paper N/A Primer qPCR: Slit3 Reverse; 5’-tgtccctcaaagcccaga-3’ This paper N/A Primer qPCR: Gapdh Forward; 5’-GCATGGCCTTCCGTGTTC-3’, This paper N/A Primer qPCR: Gapdh Reverse; 5’-TGTCATCATACTTGGCAGGTTTCT-3’ This paper N/A Recombinant DNA Plasmid ISH: Ephrin-B1 Dr Valérie Castellani (MeLiS, University Claude Bernard Lyon 1, Lyon, France) N/A Plasmid ISH: Netrin1 Dr Valérie Castellani (MeLiS, University Claude Bernard Lyon 1, Lyon, France); Nawabi et al.66 N/A (Continued on next page) Developmental Cell 59, 1–16.e1–e8, December 16, 2024 e3
Recombinant:Article Title: Axon guidance during mouse central nervous system regeneration is required for specific brain innervation.
Article Snippet: .. REAGENT or RESOURCE SOURCE IDENTIFIER Antibodies Chicken polyclonal anti-GFP antibody Abcam Cat# ab13970; RRID: AB_300798 Goat polyclonal anti-VGLUT2 antibody Abcam Cat# ab178538; RRID: AB_3661773 Goat anti-CART antibody R&D Systems Cat# AF163; RRID: AB_2068569 Goat anti-parvalbumin antibody Abcam Cat# ab32895; RRID: AB_777105 Goat anti-osteopontin R&D Systems Cat# AF808; RRID: AB_2194992 Guinea polyclonal pig anti-RBPMS antibody Millipore Cat# ABN1376; RRID: AB_2687403 Mouse monoclonal anti-tubulin b3 (TUJ1) antibody Biolegend Cat# 801202;RRID: AB_10063408 Mouse monoclonal anti-PSD95 antibody Abcam Cat# ab2723 ; RRID: AB_303248 Mouse anti-Neurofilament H (NF-H), nonphosphorylated antibody (clone SMI-32) Biolegend Cat# 801701; RRID: AB_2564642 Rabbit polyclonal anti-VIP (Vasoactive Intestinal Peptide) antibody Immunostar Cat# 20077;RRID: AB_572270 Rabbit monoclonal anti-c-fos antibody Cell Signaling Technology Cat# 2250 ; RRID: AB_2247211 Rabbit anti-FOXP2 Abcam Cat# ab16046; RRID: AB_2107107 Rabbit polyclonal anti-melanopsin antibody Abcam Cat# ab19306; RRID: AB_444842 Rabbit polyclonal anti-Cre recombinase antibody Biolegend Cat# 908001; RRID: AB_2565079 Goat polyclonal anti-Robo1 antibody R&D Systems Cat# AF1749; RRID: AB_354969 Goat polyclonal anti-Robo2 antibody Dr Alain Chédotal (Institut de la Vision, Paris, France; MeLiS, University Claude Bernard Lyon 1, Hospices civils de Lyon, Lyon, France); Dominici et al.63 N/A Donkey anti-rabbit IgG (H+L) highly crossabsorbed secondary antibody, Alexa Fluor 488 Thermo Fisher Scientific Cat# A-21206;RRID: AB_2535792 Donkey anti-rabbit IgG (H+L) highly crossabsorbed secondary antibody, Alexa Fluor 647 Thermo Fisher Scientific Cat# A-31573;RRID: AB_2536183 Donkey anti-chicken IgY (IgG) (H+L) antibody, Alexa Fluor 488 Jackson ImmunoResearch Labs Cat# 703-545-155; RRID: AB_2340375 Donkey anti-guinea pig IgG (H+L), Alexa Fluor 647 Jackson ImmunoResearch Labs Cat# 706-605-148; RRID: AB_2340476 Donkey anti-goat IgG (H+L), Alexa Fluor 488 Thermo Fisher Scientific Cat# A11055; RRID: AB_2534102 Donkey anti-mouse IgG (H+L), Alexa Fluor 647 Thermo Fisher Scientific Cat# A31571; RRID_162542 Donkey anti-mouse IgG (H+L), Alexa Fluor 568 Thermo Fisher Scientific Cat# A10037; RRID: AB_2534013 Bacterial and virus strains AAV2-Cre Belin et al.4 N/A AAV2-CNTF Belin et al.4 N/A AAV2-c-myc Belin et al.4 N/A AAV2-TVA-RG Produced using pAAV-DIO-TVA-V5-RG (see Recombinant DNA) N/A AAV2-pVIP-Cre This paper N/A (Continued on next page) Developmental Cell 59, 1–16.e1–e8, December 16, 2024 e1 .. REAGENT or RESOURCE SOURCE IDENTIFIER Primer ISH: Robo1 Forward; 5’-AGCAGTGGATGGCACTTTAA-3’ This paper N/A Primer ISH: Robo1 Reverse; 5’-GGAAAAGGTAAATGGCGTTA-3’ This paper N/A Primer ISH: Robo2 Forward; 5’-CTTTTCCCGAATCAACCTCA-3’ This paper N/A Primer ISH: Robo2 Reverse; 5’-GGGAGGTCATTCATATCATA-3’ This paper N/A Primer ISH: Sema6D Forward; 5’-TTCCTCCATGTGTGTCCTGT-3’ This paper N/A Primer ISH: Sema6D Reverse; 5’-GTTGGGTAAATGACTGGGTGATGT-3’ This paper N/A Primer ISH: Sfrp1 Forward; 5’-GGACCTGAGGCTGTGCCACA-3’ This paper N/A Primer ISH: Sfrp1 Reverse; 5’-TCTTCTTGGGGACAATCTTC-3’ This paper N/A Primer ISH: Sfrp2 Forward; 5’-GCCCAACCTGCTGGGCCACG-3’ This paper N/A Primer ISH: Sfrp2 Reverse; 5’-CGCCGTTCAGCTTGTAAATG-3’ This paper N/A Primer ISH: Slit1 Forward; 5’-CACTGGGTTGTTTAAGAAGC-3’ This paper N/A Primer ISH: Slit1 Reverse; 5’-CCTGGCCTTCCTCACACCTG-3’ This paper N/A Primer ISH: Slit2 Forward; 5’-CCTGCCAGCATGACTCCAAG-3’ This paper N/A Primer ISH: Slit2 Reverse; 5’-TCTATAGAGTTCCACGGCAA-3’ This paper N/A Primer ISH: VEGF-A Forward; 5’-GCAGCGACAAGGCAGACTA-3’ This paper N/A Primer ISH: VEGF-A Reverse; 5’-GCTAGCACTTCTCCCAGCTC-3’ This paper N/A Primer qPCR: Slit1 Forward; 5’-AGGTGCAAAAGGGCGAAT-3’ This paper N/A Primer qPCR: Slit1 Reverse; 5’-CGAGAGGGTACAGGCAGGT-3’ This paper N/A Primer qPCR: Slit2 Forward; 5’-CGGGGACAGCTGTGATAGAG-3’ This paper N/A Primer qPCR: Slit2 Reverse; 5’-CCAAGCGAGATACTTTCTTAGTTGT-3’ This paper N/A Primer qPCR: Slit3 Forward; 5’-gccacctcagtgagaacctc-3’ This paper N/A Primer qPCR: Slit3 Reverse; 5’-tgtccctcaaagcccaga-3’ This paper N/A Primer qPCR: Gapdh Forward; 5’-GCATGGCCTTCCGTGTTC-3’, This paper N/A Primer qPCR: Gapdh Reverse; 5’-TGTCATCATACTTGGCAGGTTTCT-3’ This paper N/A Recombinant DNA Plasmid ISH: Ephrin-B1 Dr Valérie Castellani (MeLiS, University Claude Bernard Lyon 1, Lyon, France) N/A Plasmid ISH: Netrin1 Dr Valérie Castellani (MeLiS, University Claude Bernard Lyon 1, Lyon, France); Nawabi et al.66 N/A (Continued on next page) Developmental Cell 59, 1–16.e1–e8, December 16, 2024 e3
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